v.2.1.3

What's Changed

• Fixture/some improvements by @KateSakharova in #46
• Pypi release by @KateSakharova in #47

New Contributors

• @KateSakharova made their first contribution in #46

Full Changelog: v.2.1.2...v.2.1.3

EukCC 2.0

EukCC version 2 is a major revision of the EukCC pipeline.

Changes include:

• replacing pplacer with epa-na
• replacing GeneMark-ES with Metaeuk

This release breaks command line compatibility.

Version 0.3

Changelog:

• We now report maximal silent contamination when using GeneMark-ES
• Users can now provide a node that will be used to estimate completeness (see Issue: #15)
• Eukaryotic filter script got some speed and usability improvements (allows multithreading now)

EukCC version 0.1.5.1

v.0.1.5.1

EukCC version 0.1.5.1

EukCC version 0.1.5

This version of EukCC addresses several issues that came up in the past.

Notable changes:

• EukCC now creates the file 'eukcc.tsv' even if no estimation was done.
• Exit codes are more consistent now
• EukCC is not depended on successful installation of ete3 plotting routines and only imports packages if needed
• Generally EukCC exits more gracefully is issues occur

EukCC - minor release

v.0.1.4.6

updating install instructions