Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Viral genomics analysis pipelines
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
ClairS - a deep-learning method for long-read somatic small variant calling
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Parse Illumina sample sheets with Python
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
A pipeline to detect chimeric transcripts derived from genes and transposable elements.
Evaluating Nanopore-based bacterial variant calling
🍸 Web-based database system for flow cell management (incl. REST API)
A modern Python library for BaseSpace Clarity LIMS.
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
Snakemake based framework for NGS data analysis and management
A pipeline to go from raw sequencing data to high quality bins and pretty plots.
Automated Tool for Global Screening Array analysis
Demultiplexing utility, companion to flowcelltool.
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