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@broadinstitute

Broad Institute

Broad Institute of MIT and Harvard

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  1. gatk gatk Public

    Official code repository for GATK versions 4 and up

    Java 1.8k 602

  2. picard picard Public

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java 996 372

  3. cromwell cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 1k 360

Repositories

Showing 10 of 1348 repositories
  • puppet-amavisd Public

    Puppet module for installing and configuring amavis-new

    broadinstitute/puppet-amavisd’s past year of commit activity
    Puppet 0 BSD-3-Clause 2 0 1 Updated Mar 3, 2025
  • python-cert_manager Public

    Python interface to the Sectigo Certificate Manager REST API

    broadinstitute/python-cert_manager’s past year of commit activity
    Python 37 BSD-3-Clause 22 2 2 Updated Mar 3, 2025
  • puppet-pdsh Public

    Puppet module to control the pdsh application

    broadinstitute/puppet-pdsh’s past year of commit activity
    Ruby 0 0 0 1 Updated Mar 3, 2025
  • bits-appengine Public

    BITS AppEngine Python Package

    broadinstitute/bits-appengine’s past year of commit activity
    Python 0 0 0 2 Updated Mar 3, 2025
  • depmap-portal Public

    Code for the DepMap portal at depmap.org

    broadinstitute/depmap-portal’s past year of commit activity
    Python 7 BSD-2-Clause 1 0 8 Updated Mar 3, 2025
  • gatk Public

    Official code repository for GATK versions 4 and up

    broadinstitute/gatk’s past year of commit activity
    Java 1,777 602 1,235 (8 issues need help) 137 Updated Mar 3, 2025
  • sherlock Public

    DSP DevOps's deployment source-of-truth service

    broadinstitute/sherlock’s past year of commit activity
    Go 1 BSD-3-Clause 0 0 10 Updated Mar 3, 2025
  • puppet-qualys_agent Public

    Puppet module for installing and configuring the Qualys Cloud Agent

    broadinstitute/puppet-qualys_agent’s past year of commit activity
    Ruby 3 BSD-3-Clause 8 2 1 Updated Mar 3, 2025
  • rawls Public

    Rawls service for DSDE

    broadinstitute/rawls’s past year of commit activity
    Scala 26 BSD-3-Clause 4 0 12 Updated Mar 2, 2025
  • BEClust3D Public
    broadinstitute/BEClust3D’s past year of commit activity
    Jupyter Notebook 0 0 0 8 Updated Mar 2, 2025
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