#
illumina
Here are 22 public repositories matching this topic...
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
count gene r human rstats bioconductor rnaseq deseq2 illumina exon junction derfinder annotation-agnostic recount
-
Updated
Dec 12, 2024 - R
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
-
Updated
Jul 19, 2021 - R
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
visualization package r r-package biodiversity-informatics ecology illumina metabarcoding amplicon ngs-analysis amplicon-sequencing
-
Updated
Feb 20, 2025 - R
El genoma pequeño - analysis workflow for "the little genome." This repository holds a computational workflow to analyze the mitochondrial genome.
-
Updated
Sep 25, 2024 - R
Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output
-
Updated
Jul 19, 2021 - R
VIral GEnome ASsembly pipelines for WGS
-
Updated
Feb 23, 2025 - R
A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
pipeline metagenomics illumina 16s microbiota illumina-sequencing phyloseq microbial-ecology dada2 16s-seq
-
Updated
Jun 3, 2024 - R
R functions and workflow for submitting amplicon sequence data to the ENA.
r metagenomics samples submit illumina metabarcoding amplicon submission reads ebi ena fastq-files uploading-fastqs mixs-checklists
-
Updated
Apr 17, 2024 - R
Repositorio de pipelines necesarios para analizar secuencias de amplicones illumina con mothur. Se incluyen análisis con asv de bacterias y de hongos (estos últimos poco explicados por Schloss en su SOP).
-
Updated
Jan 24, 2024 - R
Pipeline to help design and analyze SPAR-seq experiments
-
Updated
Jun 16, 2023 - R
a shiny frontend for the nextflow-bcl pipeline
-
Updated
Nov 10, 2020 - R
Bioinformatic pipeline for SARS-CoV-2 sequence analysis
-
Updated
Oct 20, 2021 - R
This pipeline is designed for the analysis of DNA methylation data generated from the Illumina HumanMethylation450 BeadChip platform.
-
Updated
Sep 14, 2023 - R
A custom bioinformatic workflow for UPDX (Universal Parasite Detection assay) sequences analysis.
-
Updated
Mar 25, 2022 - R
Microarray Analysis of Differential Expression
-
Updated
Apr 7, 2016 - R
TFM_AliciaAranda_QApckg
-
Updated
May 31, 2022 - R
TFM_AliciaAranda_Pipeline
-
Updated
May 30, 2022 - R
Improve this page
Add a description, image, and links to the illumina topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the illumina topic, visit your repo's landing page and select "manage topics."