pirovc / multitax Star 42 Code Issues Pull requests Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT) python taxonomies tree bioinformatics taxonomy ncbi ott silva greengenes gtdb pyhton-library open-tree-taxonomy biological-taxonomies Updated Sep 6, 2024 Python
Arkadiy-Garber / Taxonsluice Star 2 Code Issues Pull requests Reference-based, heuristic algorithm for identification of potential contaminants in mothur-formatted OTU tables amplicon contamination silva otu environmental Updated Apr 20, 2021 Python
mmtechslv / PhyloMAF Star 0 Code Issues Pull requests Next Generation Phylogenetic Microbiome Analysis Framework bioinformatics taxonomy phylogenetic-trees phylogenetics microbiome ott taxonomy-assignment silva microbiome-analysis taxonomic-classification otu-table greengenes 16s-rrna Updated Apr 23, 2022 Python
mmtechslv / taxamatcher Star 0 Code Issues Pull requests Correlates target taxonomy(i.e consensus lineages) with a reference taxonomy such as Greengenes, SILVA, etc. bioinformatics taxonomy metagenomics lineage taxonomy-assignment silva taxonomic-classification taxon taxa greengenes Updated Mar 16, 2021 Python