Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)
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Reference-based, heuristic algorithm for identification of potential contaminants in mothur-formatted OTU tables
microbiome analysis of ant colonies
microbiome analysis of ant colonies
Workflow and R scripts for Giongo et al. (2024)
Next Generation Phylogenetic Microbiome Analysis Framework
Workflow and R scripts for Braun-Kiewnick et al. (2024)
Correlates target taxonomy(i.e consensus lineages) with a reference taxonomy such as Greengenes, SILVA, etc.
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