🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.

Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.

An R package to analyze single-cell V(D)J data

PepTools - An Immunoinformatics (Immunological Bioinformatics) R-package for working with peptide data

🐶 hlabud: HLA genotype analysis in R

Comparison of gene usage in immune repertoires under different biological conditions

Analysis functions for deep sequenced immune repertoire (Repseq) datasets in R

Clustering of immune receptor repertoires

Suit of statistical procedures for robust quantification of various BCR and TCR repertoire properties

Immune cell phenotyping of lung cancer and lung tissue using PCA, tSNE, and other techniques

Differential presentation analysis of T cell epitopes associated with autoimmunity

Analyzed role of CD8 T cells in 13 different cancer types.

An analysis aimed at providing a benchmark of the PIEMA tool for T cell receptor (TCR) structural similarity identification. This analysis also extends PIEMA through the implementation of multiple Logistic Regression classifiers incorporating sequence and structural features to make predictions on shared specificity between TCRs.

Studying the sex differences in the immune response of plasmacytoid dendritic cells (pDCs) under different treatment conditions.

An analysis of innate lymphoid cell (ILC) populations in healthy and disregulated (IBD) gut-associated samples.