CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offering functionalities for downstream analysis of clustering results.
Statistical classifier for immune repertoires
Fast string distance computation in Python
WES HLA Typing based on multiple alternative tools
Simple Contrastive Embedding of the Primary sequence of T cell Receptors
Standardise TR/MH data
Sequence-based prediction of peptide-TCR interactions using paired chain data
Python SDK for Immune Epitope Database (IEDB) Analysis Tools API
LZ76 Graphs and Applications in Immunology
A pythonic library for analysing immunopeptidomic experiments
ESMDesign uses ESM-IF1 for the design of fragments within multichain proteins
An ensemble method for predicting linear and conformational B-cell epitope
In silico model for predicting of Interleukin-6 inducing peptides
Machine learning based method for predicting and scanning IL-5 inducing petides
Accompanying Repository to TCR-TRANSLATE paper.
A method for predicting cytokine IL-13 inducing peptides
Prediction of interferon-gamma inducing peptides using alignment-based and alignment-free methods
An improved method for predicting binders of HLA-DRB1-04:01
Proteome-wide detection of immunogenic hotspots
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