Update VEP csqs in impact categories to match VEP #703
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ch-kr
approved these changes
May 24, 2024
| @@ -30,20 +30,20 @@ | |||
| "stop_gained", | |||
| "frameshift_variant", | |||
| "stop_lost", | |||
| "start_lost", # Considered high impact in v105, previously medium | |||
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it won't let me comment above, but lines 24-25 say:
# Note that this is the current as of v81 with some included for backwards
# compatibility (VEP <= 75)
how about
# Note that this is the current as of v105 with some included for backwards
# compatibility (VEP <= 75)
# See: https://www.ensembl.org/info/genome/variation/prediction/predicted_data.html
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This moves
start_lostfrom medium to high impact andsplice_region_variantfrom medium to low impact. These match the current ensembl table.