Add function for adding gencode annotation #681
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ch-kr
reviewed
Mar 4, 2024
Co-authored-by: Katherine Chao <kchao@broadinstitute.org>
ch-kr
reviewed
Mar 4, 2024
ch-kr
approved these changes
Mar 4, 2024
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| gencode_cds = gencode_cds.checkpoint( | ||
| new_temp_file(prefix="gencode_cds", extension="ht") |
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one minor comment that I missed before -- should you specify overwrite=True here? (or add an overwrite argument to the function to control _read_if_exists vs overwrite)
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it doesn't matter what overwrite is set to if new_temp_file is used (distinct name each time)
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ooh, really? that's really cool! but then I guess you lose the functionality of reading from existing files for slower pipelines
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