Changed or to and in set_female_metrics_to_na

[ch-kr]

Function previously was not correctly setting metrics to missing on chrY (XX samples only). For example:

+----------+---------+
| locus         | alleles     | ac_xx_adj | y_par | y_nonpar | y_conds |
+---------------+-------------+-----------+-------+----------+---------+
| locus<GRCh38> | array<str>  |     int32 |  bool |     bool |    bool |
+---------------+-------------+-----------+-------+----------+---------+
| chrY:2786709  | ["G","T"]   |        NA | false |     true |    true |
| chrY:2786719  | ["C","A"]   |         0 | false |     true |    true |

• y_par is an annotation showing whether the locus is in a pseudoautosomal region of chromosome Y
• y_nonpar is an annotation showing whether the locus is in a non-pseudoautosomal region of chromosome Y
• y_conds is an annotation with the following condition: (~locus.in_y_nonpar() | ~locus.in_y_par())

ac_xx_adj should be NA on both lines, but you can see that on both lines, y_conds evaluates to True, which means line 779 will return the original value of this metric (and not missing).

[mike-w-wilson]

LGTM!