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    16 repositories

    • Protocols

      Public
      Protocols for the lab
      1•1•0•0•Updated Nov 21, 2022Nov 21, 2022

    • RNAseqCluster

      Public
      A shiny app that normalizes RNAseq counts files.
      R
      •0•0•0•0•Updated Oct 3, 2022Oct 3, 2022

    • RetrieveGene

      Public
      python script to retrieve a sequence from a genome or tyranscriptome feasts file.
      Python
      •0•0•0•0•Updated Mar 13, 2022Mar 13, 2022

    • Snakemake_ATAC_seq

      Public
      Pipeline for the analysis of PE ATAC-seq data
      Python
      •
      MIT License
      •1•0•0•0•Updated Feb 1, 2021Feb 1, 2021

    • qPCR_app

      Public
      App for analysis and visualization of qPCR results from the output files of the ImageQuant3 qPCR machine
      R
      •0•0•0•0•Updated Dec 15, 2020Dec 15, 2020

    • Snakemake_ChIP_seq_SE

      Public
      Pipeline for the analysis of Single-end ChIP-seq data
      Python
      •
      MIT License
      •2•0•0•0•Updated Jul 21, 2020Jul 21, 2020

    • Snakemake_ChIPseq_PE

      Public
      Pipeline for the analysis of PE ChIP-seq data
      snakemakechip-seq-pipelines
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •4•14•5•0•Updated Jul 20, 2020Jul 20, 2020

    • Snakemake_plant_methylSeekR

      Public
      Snakemake pipeline to adjust the R package methylSeekR to plant genomes
      Python
      •0•0•0•0•Updated Jul 1, 2020Jul 1, 2020

    • Snakemake_SRA_grep_and_map

      Public
      Downloads and maps SRA data from NCBI
      Python
      •0•1•0•0•Updated Jun 13, 2020Jun 13, 2020

    • retrieveSequence

      Public
      Python
      •0•0•0•0•Updated May 18, 2020May 18, 2020

    • allel-specific-expression-analysis-in-F1

      Public
      0•0•0•0•Updated Apr 1, 2020Apr 1, 2020

    • Snakemake_trinity

      Public
      pipeline to create a transcriptome fasta from raw RNA-seq fastq without a reference genome
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Feb 4, 2020Feb 4, 2020

    • Snakemake_hisat-DESeq

      Public
      A Snakemake pipeline to analyse RNA-Seq reads
      R
      •
      MIT License
      •3•5•6•1•Updated Jan 7, 2020Jan 7, 2020

    • Snakemake_salmon

      Public
      test snakemake pipeline for RNA_seq data
      Python
      •1•1•2•0•Updated Oct 1, 2018Oct 1, 2018

    • viral-ngs

      Public
      Viral genomics analysis pipelines
      Python
      •
      Other
      •67•0•0•0•Updated Jul 24, 2018Jul 24, 2018

    • ChIP-seq-analysis

      Public
      ChIP-seq analysis notes from Ming Tang
      Python
      •
      MIT License
      •297•1•0•0•Updated Jul 19, 2018Jul 19, 2018