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@KoesGroup

KoesGroup

Plant development and (Epi)Genetics

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  1. Snakemake_ChIPseq_PE Snakemake_ChIPseq_PE Public

    Pipeline for the analysis of PE ChIP-seq data

    Python 14 4

  2. Snakemake_salmon Snakemake_salmon Public

    test snakemake pipeline for RNA_seq data

    Python 1 1

  3. Snakemake_hisat-DESeq Snakemake_hisat-DESeq Public

    A Snakemake pipeline to analyse RNA-Seq reads

    R 5 3

Repositories

Showing 10 of 16 repositories
  • Protocols Public

    Protocols for the lab

    KoesGroup/Protocols’s past year of commit activity
    1 1 0 0 Updated Nov 21, 2022
  • RNAseqCluster Public

    A shiny app that normalizes RNAseq counts files.

    KoesGroup/RNAseqCluster’s past year of commit activity
    R 0 0 0 0 Updated Oct 3, 2022
  • RetrieveGene Public

    python script to retrieve a sequence from a genome or tyranscriptome feasts file.

    KoesGroup/RetrieveGene’s past year of commit activity
    Python 0 0 0 0 Updated Mar 13, 2022
  • Snakemake_ATAC_seq Public

    Pipeline for the analysis of PE ATAC-seq data

    KoesGroup/Snakemake_ATAC_seq’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Feb 1, 2021
  • qPCR_app Public

    App for analysis and visualization of qPCR results from the output files of the ImageQuant3 qPCR machine

    KoesGroup/qPCR_app’s past year of commit activity
    R 0 0 0 0 Updated Dec 15, 2020
  • Snakemake_ChIP_seq_SE Public Forked from JihedC/ChIP_seq_SE_Snakemake

    Pipeline for the analysis of Single-end ChIP-seq data

    KoesGroup/Snakemake_ChIP_seq_SE’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Jul 21, 2020
  • Snakemake_ChIPseq_PE Public

    Pipeline for the analysis of PE ChIP-seq data

    KoesGroup/Snakemake_ChIPseq_PE’s past year of commit activity
    Python 14 CC-BY-SA-4.0 4 5 (1 issue needs help) 0 Updated Jul 20, 2020
  • Snakemake_plant_methylSeekR Public

    Snakemake pipeline to adjust the R package methylSeekR to plant genomes

    KoesGroup/Snakemake_plant_methylSeekR’s past year of commit activity
    Python 0 0 0 0 Updated Jul 1, 2020
  • Snakemake_SRA_grep_and_map Public

    Downloads and maps SRA data from NCBI

    KoesGroup/Snakemake_SRA_grep_and_map’s past year of commit activity
    Python 1 0 0 0 Updated Jun 13, 2020
  • retrieveSequence Public
    KoesGroup/retrieveSequence’s past year of commit activity
    Python 0 0 0 0 Updated May 18, 2020
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