Update proximal_vcf.rst to mention GATK 3.6.0

griffithlab · Jun 26, 2023 · 05c9c5c · 05c9c5c
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diff --git a/docs/pvacseq/input_file_prep/proximal_vcf.rst b/docs/pvacseq/input_file_prep/proximal_vcf.rst
@@ -110,6 +110,8 @@ ______________________________
 Phase variants using GATK’s ReadBackedPhasing
 _____________________________________________
 
+Unfortunately, the tool used for this step is no longer available in current versions of GATK. We recommend using GATK 3.6.0 to run this step.
+
 .. code-block:: none
 
    /usr/bin/java -Xmx16g -jar /opt/GenomeAnalysisTK.jar \