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Investigate mouse_anchor readTable warnings

pVACview

Status: Open.

#1176 In griffithlab/pVACtools;

· malachig opened on Jan 7, 2025

 ·  

5.2.0

Create documentation for the download_cwls/wdls commands

documentation

Status: Open.

#1175 In griffithlab/pVACtools;

· susannasiebert opened on Jan 7, 2025

 ·  

5.2.0

Consider HLApollo for integration

grant

Status: Open.

#1172 In griffithlab/pVACtools;

· susannasiebert opened on Jan 6, 2025

Error: No command specified

bug report / hotfix PR

Status: Open.

#1158 In griffithlab/pVACtools;

· Geneece opened on Nov 19, 2024

Allow passing candidates to be based on binding OR percentile cutoff.

Status: Open.

#1142 In griffithlab/pVACtools;

· malachig opened on Sep 9, 2024

 ·  

5.2.0

Plans for adding NetTCR-2.0?

Status: Open.

#1141 In griffithlab/pVACtools;

· lukaas33 opened on Sep 7, 2024

Update pVACview documentation (vignette) and pVACview Tutorials page to mention anchor weights and anchor distribution tables

documentation

Status: Open.

#1140 In griffithlab/pVACtools;

· susannasiebert opened on Sep 5, 2024

 ·  

5.2.0

pVACseq: Discrepancy between {sample_id}.all_epitopes.tsv and {sample_id}.fasta ?

bug report / hotfix PR

Status: Open.

#1118 In griffithlab/pVACtools;

· yiolino opened on Jun 26, 2024

Potential improvements to the pVACview NeoFox module

pVACview

Status: Open.

#1098 In griffithlab/pVACtools;

· susannasiebert opened on Apr 30, 2024

Consider integration of MixMHCPred2

Status: Open.

#1093 In griffithlab/pVACtools;

· malachig opened on Apr 15, 2024

Output a visual representation of the graph after all spacers have been tested

pVACvector

Status: Open.

#1089 In griffithlab/pVACtools;

· susannasiebert opened on Apr 5, 2024

 ·  

5.2.0

QUESTION: How to integrate netchop results to aditionnally filter possible peptides

Status: Open.

#1064 In griffithlab/pVACtools;

· PierreLaplante opened on Feb 19, 2024