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add ATACseqQC
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crazyhottommy authored May 31, 2017
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Expand Up @@ -373,6 +373,7 @@ A paper from Genome Research [Ubiquitous heterogeneity and asymmetry of the chro

>Some may notice that the peaks produced look both like peaks produced from the TF ChIP-seq pipeline as well as the histone ChIP-seq pipeline. This is intentional, as ATAC-seq data looks both like TF data (narrow peaks of signal) as well as histone data (broader regions of openness).
* [ATACseqQC ](http://bioconductor.org/packages/release/bioc/html/ATACseqQC.html) a bioconductor package for quality control of ATAC-seq data.
* [RASQUAL](/~https://github.com/dg13/rasqual) (Robust Allele Specific QUAntification and quality controL) maps QTLs for sequenced based cellular traits by combining population and allele-specific signals. [paper: Fine-mapping cellular QTLs with RASQUAL and ATAC-seq](http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3467.html)
* [ATAC-seq Forum](https://sites.google.com/site/atacseqpublic/home?pli=1)
* [Single-cell ATAC-Seq](http://cole-trapnell-lab.github.io/projects/sc-atac/)
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