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Split validation to allow for streamlined parameter input #194
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Looks great!
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Great! Could the log also be changed to show which pipelines were selected?
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Looks good Yash
Yep this will be included in the documentation overhaul PR I'll be making |
I have read the code review guidelines and the code review best practice on GitHub check-list.
The name of the branch is meaningful and well formatted following the standards, using [AD_username (or 5 letters of AD if AD is too long)-[brief_description_of_branch].
I have set up or verified the branch protection rule following the github standards before opening this pull request.
I have added my name to the contributors listings in the
metadata.yaml
and themanifest
block in thenextflow.config
as part of this pull request, am listedalready, or do not wish to be listed. (This acknowledgement is optional.)
I have added the changes included in this pull request to the
CHANGELOG.md
under the next release version or unreleased, and updated the date.I have updated the version number in the
metadata.yaml
andmanifest
block of thenextflow.config
file following semver, or the version number has already been updated. (Leave it unchecked if you are unsure about new version number and discuss it with the infrastructure team in this PR.)I have tested the pipeline on at least one A-mini sample.
Updating the parameter handling to:
Testing Results
NFTest with test-metapipeline-DNA-fastq-input ran successfully -
/hot/software/pipeline/metapipeline-DNA/Nextflow/development/unreleased/yashpatel-robust-validation/log-nftest-20240429T161625Z.log
/hot/software/pipeline/metapipeline-DNA/Nextflow/development/unreleased/yashpatel-robust-validation/passes.config
/hot/software/pipeline/metapipeline-DNA/Nextflow/development/unreleased/yashpatel-robust-validation/passes.log
/hot/software/pipeline/metapipeline-DNA/Nextflow/development/unreleased/yashpatel-robust-validation/fails.config
/hot/software/pipeline/metapipeline-DNA/Nextflow/development/unreleased/yashpatel-robust-validation/fails.log