A Java API for high-throughput sequencing data (HTS) formats.

Annotation of VCF variants with functional impact and from databases (executable+library)

GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.

iPat allows you to perform GWAS and GS with drags and clicks!

A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)

(Legacy) Annotate variants for import into VarFish server.

Micro-libraries for reading and writing genomic sequence data in various formats.

Java tool to export data ifrom database in files

Useful NGS utilities for everyday use in the form of stand-alone tool.

Random Vcard generator for Android. Generate a VCF file to scrap phone numbers

Takes a vCard as input, outputs a folder full of contact photos

GBC (short for GenoType Blocking Compressor) is a blocking compressor for genotype data, which aims at creating a unified and flexible structure-GenoType Block (GTB) for genotype data in the variant call format (VCF) files.

Filtering vcf with population gvcf

Java VCF Format Reader and Writer

A command-line parser for VCF files designed for population genetics analyses.

A Java GUI toolkit to manage Android sms/call, base64 encoder, vcf parser. Moved from my repository: https://sourceforge.net/projects/andoffline/

Java tool to import data in database from files

A standalone library for minimising alleles to VCF standard