Profile RNA-seq data using published TB gene signatures

R Color package for Mycobacterium tuberculosis complex

Estimating the effect of the 2005 change in BCG policy in England: A retrospective cohort study

Time-scaled haplotypic density (THD) implementation for R. Estimates epidemic success from pathogen genetic data.

📺 Latent tuberculosis screening cost-effectiveness analysis

Cleans and Munges Tuberculosis and Demographic Data for England

R code for evaluating adult HIV incidence, health, & implementation outcomes for the first phase of the SEARCH Study (https://www.searchendaids.com/). Full statistical analysis plan available at https://arxiv.org/abs/1808.03231

Examine treatment outcomes, and predict the incidence of Tuberculosis

TBVAX Model

TB models in TMB

TB contact investigation costing R Shiny app.

A shiny app to visualise the trade-offs between school age and neonatal BCG vaccination

Shiny App focused on displaying TB data over the years.

INFIMM TB PAXGENE TUBES PROJECT

Assessing the evidence for the 2005 BCG policy change in England

R-scripts for the analyses of 'Mind the clinic-community gap: how concerned should we be about false positive test results in mass tuberculosis screening?'

🚚 Probabilistic decision tree cost-effectiveness analysis.

Gela (2022) datasets

Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.

Gela (2022) analyses and figures