Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
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Updated
Sep 1, 2024 - C
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
Solvent Accessible Surface Areas of Biomolecules and their Complexes
A slimmed down fork of CodonW with python bindings
Calculation Pair distance distribution functions for Proteins (in the PDB format)
Protein fold recognition using strucutal and sequence template threading
defines the interface region of a protein complex making possible to calculate the i_rmsd between native and predicted structures following the CAPRI criteria
This takes a PDB (Protein Data Bank) filename as an argument and produces two CSV files from it: The first, center.csv, calculates the carbon/nitrogen/calcium pseudocenter for each residue in the given PDB. The second, cadist.csv, calculates the distance between calcium atoms in neighboring residues.
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