The AMRgen package provides tools for interpreting antimicrobial resistance (AMR) genes, integrating genomic data with phenotypic antimicrobial susceptibility testing (AST) data, and calculating genotype-phenotype associations.

R package for finding patients in SQL databases using formulas and without using SQL joins

This repository serves as a valuable resource for individuals engaged in data exploration, statistical analysis, and research within the domains of plant breeding, genetics, statistics, and genomics. The purpose of this repository is to share a collection of R codes that can be utilized by others for their own data analysis projects

An R shiny app for digital image phenotyping in small fruits

an R package for predicting plant biomass accumulation based on image-derived parameters

Tools for phenotyping and modeling with the Heliaphen sunflower phenotyping platform.

Scripts for image analysis using ImageJ(java), SQL, R, and LaTex.

Package to develop and evaluate time series data models based on fluctuation based clustering and Earth Mover's Distances

R 📦 providing classes and functions to simulate breeding schemes.

This repository is a compilation of all codes for the phenotypic diversity of a worldwide sesame germplasm from the Korean genebank.

PhenomatoR: An R Package for the Analysis of Large-Scale Phenomics Data

Rosette Detection with SVM

This repository serves to document, share, and collaborate on scripts used in the University of Arkansas fruit breeding lab.

Tools for setting objective quantitative levels of expression in phenotypic characterizations

Supplimental information, data, and code for Newsome et al. 2020. "Variation within laminae: Semi-automated methods for quantifying leaf venation using phenoVein" in Applications in Plant Sciences 8(5) e11346.

My pipeline for applying PCA for 'endocrine profiling'

This repository provides a GUI app for phenotype assays analysis from raw data to chemoinformatics.

Phenotypic index measures for oak decline severity