Simple bacterial assembly and annotation pipeline

Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads

Pipeline for the identification of (coding) gene structures in draft genomes.

Pipelines for the production of Treeval data

Implementation of ToL genome assembly workflows

Assembly and intrahost / low-frequency variant calling for viral samples

UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads

pathogen agnostic general workflow for genome assembly of Illumina paired-end sequence data

Nextflow wrapper for the dragonflye assembler, with additional QC

De novo assembly pipeline for 10X linked-reads using Supernova

Nextflow pipeline to assemble genomes from long reads.

Pipeline for performing routine genome assembly

Nextflow-powered Dragonflye Pipeline for Assembling Genomes from Nanopore and Illumina Reads

Simple bacterial assembly and annotation pipeline