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epigenetics

Here are 10 public repositories matching this topic...

pinellolab / haystack_bio

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

Updated Jun 21, 2022
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aryeelab / hichipper

A preprocessing and QC pipeline for HiChIP data

bioinformatics epigenetics chromatin-interaction hichip

Updated Jul 11, 2022
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neurogenomics / EpiCompare

Comparison, benchmarking & QC of epigenetic datasets

html benchmarking benchmark genetics comparison epigenetics bioconductor r-package bioconductor-package interactive-reporting

Updated Feb 16, 2025
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epiRomics

Huising-Lab / epiRomics

An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.

transcription-factors rna-seq data-visualization epigenetics chip-seq histone atac-seq r-package enhancer transcription-factor-binding ucsc-browser regulatory-network epigenomics multi-omics enhancer-prediction chromatin-accessibiity regulome-analysis

Updated Nov 18, 2023
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fraenkel-lab / GarNet

epigenetics data-integration omics transcriptome

Updated Jun 21, 2022
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sankaranlab / erythroid-profiling

Analysis repository for Erythropoiesis ATAC/RNA profiling paper

rna-seq epigenetics atac-seq erythropoesis

Updated Feb 10, 2020
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Vogel-lab / Integrative-multi-omics-analyses-of-FOXG1-functions

The documented analysis of the results reported in Akol et al., 2023 as R markdowns, Galaxy histories and jupyter logs..

epigenetics chip-seq atac-seq rna-seq-analysis molecular-biology multi-omics pnas neurodevelopment foxg1-syndrome

Updated Jan 5, 2023
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XUKEREN / ashg-epigenetic-clock

Poster presentation at the (American Society of Human Genetics) ASHG Virtual Meeting, 2021.

epigenetics posterdown epigenetic-clock

Updated Jul 30, 2023
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changebio / EpiNet

Predicting gene expression using epigenomics data and deep learning

cnn epigenetics dl

Updated Jun 13, 2017
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aryeelab / diffloop-paper

Sample Analysis for diffloop paper

bioinformatics epigenetics dna-methylation chromatin

Updated Sep 23, 2017
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