An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
Bioinformatics pipeline for nanopore sequencing data
PhyloTrace is a GUI platform for bacterial monitoring offering a toolkit of analyses like hashed cgMLST typing and Antimicrobial Resistance Screening.
R package to perform data pre-processing for more informative bacterial GWAS
Functions for working with NCBI's Pathogen Detection data
A companion application for analyzing and viewing BTyper output files in aggregate
Data and analysis for the DciA evolution manuscript | StallingsLab & JRaviLab
Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.
A pipeline and GUI that can be used to create and view intuitive graphs of isolates.
Accompanying information to a scientific publication on the assembly of bacterial genomes using Illumina and nanopore sequencing data using Unicylcer.
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