Skip to content

provide both abundance-weighted coverage & flattened coverage in sourmash gather output? #1818

Closed
@ctb

Description

when looking at #1805, I realized that it would be nice to get both flat and abundance-weighted coverage of metagenomes when running gather. Unfortunately I don't think that's currently tracked internally, so it's a bigger change than just printing something additional out, but it would be convenient.

(Specifically, both the CSV output and the text output should contain this information.)

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions