add Linux build Action

Also add badge to readme and rename old action to be macOS specific

.github/workflows/build-linux.yml

@@ -0,0 +1,78 @@
+name: build-linux
+
+on:
+  push:
+    branches: master
+  # To be able to trigger a manual build
+  workflow_dispatch: 
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.9", "3.10", "3.11", "3.12"]
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} 
+    defaults:
+      run:
+        shell: bash -l {0}
+    steps:
+      - name: Checkout Repo
+        uses: actions/checkout@v4
+
+      - name: Install Miniconda (Python ${{ matrix.python-version }})
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          auto-update-conda: true
+          python-version: ${{ matrix.python-version }}
+          activate-environment: pyani-github
+          auto-activate-base: false
+          channels: defaults,bioconda,conda-forge
+          channel-priority: flexible
+
+      - name: Check Miniconda Installation
+        run: |
+          conda info
+          conda list
+
+      - name: Install pip
+        run: python -m pip install --upgrade pip
+
+      - name: Install Development Requirements
+        run: conda install --file requirements-dev.txt -y
+
+      - name: Install Requirements
+        run: conda install --file requirements.txt -y
+
+      - name: Install third-party tools
+        run: conda install --file requirements-thirdparty.txt -y
+
+      - name: Install and Check FastANI
+        run: |
+          conda install --file requirements-fastani.txt -y
+          fastani -h
+
+      - name: Install PyQT
+        run: conda install --file requirements-pyqt-conda.txt -y
+
+      - name: Install pip requirements
+        run: pip install -r requirements-pip.txt
+
+      - name: Install pyani
+        run: pip install -e .
+
+      - name: Check pytest modules
+        run: python -m pytest -v --collect-only
+
+      - name: Run Tests with pytest
+        run: python -m pytest -v --cov=pyani --cov-report=xml:.coverage-${{ matrix.python-version }}.xml
+
+      - name: Upload coverage Results
+        uses: actions/upload-artifact@v4
+        with:
+          name: test-coverage-${{ matrix.python-version }}
+          path: .coverage-${{ matrix.python-version }}.xml
+          retention-days: 1
+        if: ${{ always() }}

.github/workflows/build-on-push-to-master.yml → .github/workflows/build-macos.yml

@@ -67,7 +67,7 @@ jobs:
         run: python -m pytest -v --collect-only
 
       - name: Run Tests with pytest
-        run: python -m pytest -v --cov=pyani --cov-report=xml:.coverage_fast.xml
+        run: python -m pytest -v --cov=pyani --cov-report=xml:.coverage-${{ matrix.python-version }}.xml
 
       - name: Upload coverage Results
         uses: actions/upload-artifact@v4

README.md

@@ -57,7 +57,8 @@ DOI: [10.1039/C5AY02550H](https://doi.org/10.1039/C5AY02550H)
 
 -----
 
-![macOS Python 3.11 build](/~https://github.com/widdowquinn/pyani/actions/workflows/build-on-push-to-master.yml/badge.svg)
+![macOS Python 3.11 build](/~https://github.com/widdowquinn/pyani/actions/workflows/build-macos.yml/badge.svg)
+![Linux Python 3.11 build](/~https://github.com/widdowquinn/pyani/actions/workflows/build-linux.yml/badge.svg)
 [![codecov.io coverage](https://img.shields.io/codecov/c/github/widdowquinn/pyani/master.svg)](https://codecov.io/github/widdowquinn/pyani)
 [![Codacy Badge](https://app.codacy.com/project/badge/Grade/f3e56b2bf118471aabf09514a3e6af75)](https://www.codacy.com/manual/widdowquinn/pyani?utm_source=github.com&utm_medium=referral&utm_content=widdowquinn/pyani&utm_campaign=Badge_Grade)
 [![CodeFactor](https://www.codefactor.io/repository/github/widdowquinn/pyani/badge)](https://www.codefactor.io/repository/github/widdowquinn/pyani)