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@umccr

UMCCR

University of Melbourne Centre for Cancer Research

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  1. htsget-rs htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    Rust 41 9

  2. infrastructure infrastructure Public

    Infrastructure as Code at UMCCR

    Python 10 8

  3. cwl-ica cwl-ica Public

    A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide

    Common Workflow Language 9 2

  4. data-portal-apis data-portal-apis Public

    UMCCR Data Portal API Backend in cloud native serverless

    Python 1

  5. orcabus orcabus Public

     🐋 UMCCR Pipeline & Workflow Orchestration

    Python 5

  6. RNAsum RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    R 7 4

Repositories

Showing 10 of 106 repositories
  • oncoanalyser-aws Public Forked from umccr/nextflow-stack
    umccr/oncoanalyser-aws’s past year of commit activity
    TypeScript 0 1 6 1 Updated Mar 4, 2025
  • gatk-bwamem-jni Public

    JNI code for bwa mem

    umccr/gatk-bwamem-jni’s past year of commit activity
    Java 0 BSD-3-Clause 0 0 0 Updated Mar 4, 2025
  • sk-explore Public
    umccr/sk-explore’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 4, 2025
  • gatk-bwamem-jni-broadinstitute-fork Public Forked from broadinstitute/gatk-bwamem-jni

    JNI code for bwa mem

    umccr/gatk-bwamem-jni-broadinstitute-fork’s past year of commit activity
    Java 0 BSD-3-Clause 5 0 0 Updated Mar 4, 2025
  • orcahouse-doc Public

    📘 Warehouse Documentation

    umccr/orcahouse-doc’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 4, 2025
  • orcabus Public

     🐋 UMCCR Pipeline & Workflow Orchestration

    umccr/orcabus’s past year of commit activity
    Python 5 0 71 (1 issue needs help) 9 Updated Mar 4, 2025
  • oncoanalyser-aws-example-deploy Public

    Instructions and example deploy project for a Oncoanalyser in AWS

    umccr/oncoanalyser-aws-example-deploy’s past year of commit activity
    0 MIT 0 0 0 Updated Mar 4, 2025
  • pcgr Public Forked from sigven/pcgr

    Personal Cancer Genome Reporter (PCGR)

    umccr/pcgr’s past year of commit activity
    R 0 MIT 49 0 0 Updated Mar 3, 2025
  • orcahouse Public

    🐳 UMCCR Pipeline & Workflow Data Warehouse

    umccr/orcahouse’s past year of commit activity
    HCL 0 0 1 0 Updated Mar 3, 2025
  • sash Public
    umccr/sash’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Mar 2, 2025
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