Update cluster reference paths

[nwiltsie]

This PR updates reference paths that were renamed during the most recent cluster downtime.

I was specifically looking for single lines containing one (or more) of the following keys, so I missed any paths split across multiple lines.

Search String
/hot/ref/
/hot/ref/cohort/TCGA/CCG-AIM/
/hot/ref/cohort/TCGA/PanCanAtlas/
/hot/ref/database/1000Genomes/
/hot/ref/database/GDC-34.0
/hot/ref/database/GDC-34.0/
/hot/ref/database/PCAWG/
/hot/ref/database/ProstateTumor/Boutros-Yamaguchi-PRAD-CPCG/
/hot/ref/reference/
/hot/resource/SMC-HET/

A table of updated filepaths and whether or not they resolve to a file is included below. Where the original paths still exist due to symlinks I verified that they resolve to the same file as the updated path.

Original		Updated
/hot/ref/reference/GRCh38-BI-20160721/Homo_sapiens_assembly38.fasta	✅	/hot/resource/reference-genome/GRCh38-BI-20160721/Homo_sapiens_assembly38.fasta	✅
/hot/ref/tool-specific-input/Delly/GRCh38/human.hg38.excl.tsv	✅	/hot/resource/tool-specific-input/Delly/GRCh38/human.hg38.excl.tsv	✅
/hot/ref/tool-specific-input/Delly/GRCh38/Homo_sapiens.GRCh38.dna.primary_assembly.fa.r101.s501.blacklist.gz	✅	/hot/resource/tool-specific-input/Delly/GRCh38/Homo_sapiens.GRCh38.dna.primary_assembly.fa.r101.s501.blacklist.gz	✅
/hot/ref/tool-specific-input/Delly/hg38/human.hg38.excl.tsv	✅	/hot/resource/tool-specific-input/Delly/hg38/human.hg38.excl.tsv	✅
/hot/resource/SMC-HET/normal/bams/A-mini/n1/output/HG002.N-n1.bam	✅	/hot/data/unregistered/SMC-HET/normal/bams/A-mini/n1/output/HG002.N-n1.bam	✅

[wiz-inc-8da00b022c]

Wiz Scan Summary

Scan Module						Total
IaC Misconfigurations	0	0	0	0	0	0
Vulnerabilities	0	0	0	0	0	0
Sensitive Data	0	0	0	0	1	1
Secrets	0	0	0	0	0	0
Total	0	0	0	0	1	1

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