Initial commit

.Rbuildignore

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+^.*\.Rproj$
+^\.Rproj\.user$
+.github

.github/ISSUE_TEMPLATE/BUG_REPORT.md

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+---
+name: Bug Report
+about: Create a report to help us improve this package
+title: ""
+labels: ["bug"]
+assignees: ''
+
+---
+      
+**Describe the issue**
+A clear and concise description of what the issue is. Please include the following in your issue report along with any explicit errors observed
+* Package release version
+* R version
+
+**To Reproduce**
+`Simplified input program`
+
+**Expected behavior**
+A clear and concise description of what you expected to happen.
+`Output if applicable'
+
+**Screenshots**
+If applicable, add screenshots to help explain your problem.
+
+**Additional context**
+Add any other context about the problem here.

.github/PULL_REQUEST_TEMPLATE.md

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+> This is a template for UCLA-CDS R package developers to create a github pull request template. Things should be adjusted for individual pipeline including:
+> 1. additional checklist items specific to the package
+> 2. a description of how testing is expected to be done
+> 3. a template list or table for testing results
+> 4. additional notes wrapped in \<!--- ---> (or \<!-- --\> for inline comments) that help PR submitters to fill in.
+> 5. delete this block of instructional text.
+
+<!--- Please read each of the following items and confirm by replacing the [ ] with a [ ] --->
+
+- [ ] I have read the [code review guidelines](https://uclahs-cds.atlassian.net/wiki/spaces/BOUTROSLAB/pages/3187646/Code+Review+Guidelines) and the [code review best practice on GitHub check-list](https://uclahs-cds.atlassian.net/wiki/spaces/BOUTROSLAB/pages/3189956/Code+Review+Best+Practice+on+GitHub+-+Check+List).
+
+- [ ] The name of the branch is meaningful and well formatted following the [standards](https://uclahs-cds.atlassian.net/wiki/spaces/BOUTROSLAB/pages/3189956/Code+Review+Best+Practice+on+GitHub+-+Check+List), using \[AD_username (or 5 letters of AD if AD is too long)-\[brief_description_of_branch].
+
+- [ ] I have set up or verified the branch protection rule following the [github standards](https://uclahs-cds.atlassian.net/wiki/spaces/BOUTROSLAB/pages/3190380/GitHub+Standards#GitHubStandards-Branchprotectionrule) before opening this pull request.
+
+- [ ] I have added the changes included in this pull request to `NEWS` under the next release version or unreleased, and updated the date.
+
+- [ ] I have updated the version number in `metadata.yaml` and `DESCRIPTION`.
+
+- [ ] Both `R CMD build` and `R CMD check` run successfully.
+
+<!--- Briefly describe the changes included in this pull request and the test cases below
+ !--- starting with 'Closes #...' if appropriate --->
+
+Closes #...
+
+## Testing Results
+
+### Case 1
+`input code`
+`output`
+### Case 2
+`input code`
+`output`

.github/workflows/CICD-base.yaml

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+---
+name: CICD-base
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+    branches:
+      - main
+jobs:
+  CICD-base:
+    runs-on: ubuntu-latest
+
+    timeout-minutes: 15
+
+    steps:
+      # Checkout codebase
+      - name: Checkout
+        uses: actions/checkout@v2
+
+      # Run CICD-base
+      - name: CICD-base
+        uses: docker://ghcr.io/uclahs-cds/cicd-base:latest

.github/workflows/R-CMD-check.yaml

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+---
+name: R-CMD-check
+
+on:
+   - push
+   - pull_request
+
+jobs:
+   R-CMD-check:
+      runs-on: ubuntu-latest
+
+      container:
+         image: blcdsdockerregistry/bl-r-devel:latest
+
+      steps:
+         - uses: actions/checkout@v2
+           with:
+              path: BoutrosLabTemplate
+         - run: R CMD build --compact-vignettes="gs+qpdf" BoutrosLabTemplate
+         - run: R CMD check --as-cran --run-donttest BoutrosLabTemplate_*.tar.gz

.gitignore

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+# System files
+.DS_Store
+
+# R
+.Rhistory
+.Rapp.history
+.RData
+*.Rproj*
+.Rproj.user

DESCRIPTION

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+Package: BoutrosLabTemplate
+Type: Package
+Title: What the Package Does (Title Case)
+Version: 0.1.0
+Author: Who wrote it
+Maintainer: The package maintainer <yourself@somewhere.net>
+Description: More about what it does (maybe more than one line)
+    Use four spaces when indenting paragraphs within the Description.
+Depends: 
+    R (>= 2.10)
+Imports:
+Suggests: 
+    testthat (>= 3.0.0)
+Config/testthat/edition: 3
+License: GPL-2
+Encoding: UTF-8
+LazyData: true