Bayesian multi-object tracking

Cell tracking and segmentation software

A python algorithm for tracking cells in 3D time lapse images.

Track and lineage visualization with btrack and Napari 🌲

For cell segmentation and tracking.

Explainable AI model of cell behavior

(Biological) Cell Tracker for Microscopy Image Analysis

An R package for the analysis and interpretation of cell migration tracks.

A Python module intended to make cell segmentation, tracking and subsequent (mostly biophysical) statisticial analysis easy

Harness deep learning and bounding boxes to perform object detection, segmentation, tracking and more.

Distance-transform-prediction-based segmentation method used for our submission to the 6th edition of the ISBI Cell Tracking Challenge 2021 as team KIT-Sch-GE (2) (now KIT-GE (3)).

Microscopy image processing with TensorFlow

MigrationmineR is a R package to analyse and profile in vitro cell tracking and migration data. It is belongs to the cytominer-verse used for morphological profiling and allows to create temporal or dynamic profiles.

Ultrack From Images to Knowledge (I2k) 2024 Workshop

Track 2D cell motion and mitosis in time-lapse microscopy

Cell segmentation and tracking pipeline for time-lapse microscopy data using Cellpose. Includes segmentation, tracking, and correlation analysis of cell properties over time.

Dual decomposition solvers for various cell tracking problem formulations based on the LP_MP library

A user-friendly tracking system for long-term migratory and proliferating cells

MPM: Joint Representation of Motion and Position Map for Cell Tracking