Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
-
Updated
Feb 27, 2025 - Python
#
2-photon
Here are 16 public repositories matching this topic...
Flow-Registration toolbox for 2P motion compensation
-
Updated
Jul 26, 2024 - MATLAB
Serial-section automated anatomy extension for ScanImage
matlab neuroscience tomography microscopy imaging anatomy neuroanatomy 2-photon scanimage serial-section
-
Updated
Feb 21, 2025 - MATLAB
Simple Python scanning software for demo purposes
-
Updated
Oct 16, 2023 - Python
Simple MATLAB scanning software for demo purposes
-
Updated
Oct 16, 2023 - MATLAB
PVBS (Prairie View Browsing Solution) - General-purpose GUI for electrophysiology (patch clamp) and calcium imaging
neuroscience electrophysiology calcium-imaging 2-photon neurophysiology patch-clamp 2p-imaging prairie-view patchclamp glutamate-uncaging 2p-uncaging 2p-glutamate-uncaging
-
Updated
Feb 21, 2025 - MATLAB
utility functions for analyzing (fly) calcium imaging data
-
Updated
Sep 25, 2024 - Jupyter Notebook
Examples illustrating basic stages of analyzing calcium imaging data
-
Updated
Oct 29, 2020 - MATLAB
2-Photon Imaging Data Registration/Alignment Across Recording Days. Created for Apostolides Lab, rotation 2, Fall 2020.
-
Updated
Dec 21, 2020 - MATLAB
read and analyse 2 photon images from ScanImage
-
Updated
Aug 21, 2018 - R
Code for Important Processing Steps For .Tiff or .Raw Video Files Acquired From 2-Photon Imaging System + Completely Automated and With NWB Schema (.HDF5) Capability
metadata timeseries physics neuroscience statistical-mechanics videos neurons scaling microscopy 2-photon criticality renormalization-group
-
Updated
Jul 21, 2021 - MATLAB
Notebook to analyze ThorImage + ThorSync 2-photon data with light stimulation.
-
Updated
May 13, 2022 - Jupyter Notebook
Utility functions for data generated with ThorImage and ThorSync.
-
Updated
Nov 13, 2024 - Python
PKGBUILD of CaImAn for Archlinux
-
Updated
Nov 2, 2017 - Shell
Matlab scripts for analyzing calcium imaging data presented in "Neural Coding of Leg Proprioception in Drosophila" (Mamiya, Gurung, and Tuthill (2018) Neuron: DOI:https://doi.org/10.1016/j.neuron.2018.09.009)
image-processing fast-fourier-transform region-detection drosophila calcium-imaging image-registration gaussian-filter region-of-interest 2-photon correlation-matrices k-means-clustering
-
Updated
Jul 8, 2020 - MATLAB
Improve this page
Add a description, image, and links to the 2-photon topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the 2-photon topic, visit your repo's landing page and select "manage topics."