prep for release

thomasp85 · Dec 18, 2023 · 3df000d · 3df000d
1 parent 0bf9699
commit 3df000d
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diff --git a/NAMESPACE b/NAMESPACE
@@ -101,6 +101,7 @@ export("%N>%")
 export(.E)
 export(.G)
 export(.N)
+export(.free_graph_context)
 export(.graph_context)
 export(.register_graph_context)
 export(activate)

diff --git a/cran-comments.md b/cran-comments.md
@@ -1,15 +1,15 @@
-Minor release fixing changes from igraph and dplyr
+Minor release with a bunch of new features and bug fixes. No changes to worse
+detected in reverse dependencies
 
 ## revdepcheck results
 
-We checked 52 reverse dependencies (51 from CRAN + 1 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 52 reverse dependencies (50 from CRAN + 2 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
 
  * We saw 0 new problems
- * We failed to check 2 packages
+ * We failed to check 1 packages
 
 Issues with CRAN packages are summarised below.
 
 ### Failed to check
 
-* numbat   (NA)
-* Platypus (NA)
+* numbat (NA)
diff --git a/revdep/README.md b/revdep/README.md
@@ -2,9 +2,9 @@
 
 ## Failed to check (3)
 
-|package  |version |error |warning |note |
-|:--------|:-------|:-----|:-------|:----|
-|numbat   |?       |      |        |     |
-|Platypus |?       |      |        |     |
-|NA       |?       |      |        |     |
+|package |version |error |warning |note |
+|:-------|:-------|:-----|:-------|:----|
+|NA      |?       |      |        |     |
+|numbat  |?       |      |        |     |
+|NA      |?       |      |        |     |
 
diff --git a/revdep/cran.md b/revdep/cran.md
@@ -1,13 +1,12 @@
 ## revdepcheck results
 
-We checked 52 reverse dependencies (51 from CRAN + 1 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 52 reverse dependencies (50 from CRAN + 2 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
 
  * We saw 0 new problems
- * We failed to check 2 packages
+ * We failed to check 1 packages
 
 Issues with CRAN packages are summarised below.
 
 ### Failed to check
 
-* numbat   (NA)
-* Platypus (NA)
+* numbat (NA)
diff --git a/revdep/failures.md b/revdep/failures.md
@@ -1,14 +1,13 @@
-# numbat
+# NA
 
 <details>
 
-* Version: 1.2.1
-* GitHub: /~https://github.com/kharchenkolab/numbat
-* Source code: /~https://github.com/cran/numbat
-* Date/Publication: 2023-01-11 00:20:02 UTC
-* Number of recursive dependencies: 132
+* Version: NA
+* GitHub: NA
+* Source code: /~https://github.com/cran/NA
+* Number of recursive dependencies: 0
 
-Run `cloud_details(, "numbat")` for more info
+Run `cloud_details(, "NA")` for more info
 
 </details>
 
@@ -17,22 +16,7 @@ Run `cloud_details(, "numbat")` for more info
 ### Devel
 
 ```
-* using log directory ‘/tmp/workdir/numbat/new/numbat.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘numbat/DESCRIPTION’ ... OK
-* this is package ‘numbat’ version ‘1.2.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'ggtree', 'scistreer'
 
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
 
 
 
@@ -42,39 +26,24 @@ Status: 1 ERROR
 ### CRAN
 
 ```
-* using log directory ‘/tmp/workdir/numbat/old/numbat.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘numbat/DESCRIPTION’ ... OK
-* this is package ‘numbat’ version ‘1.2.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'ggtree', 'scistreer'
 
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
 
 
 
 
 
 ```
-# Platypus
+# numbat
 
 <details>
 
-* Version: 3.4.1
-* GitHub: NA
-* Source code: /~https://github.com/cran/Platypus
-* Date/Publication: 2022-08-15 07:20:20 UTC
-* Number of recursive dependencies: 356
+* Version: 1.3.2-1
+* GitHub: /~https://github.com/kharchenkolab/numbat
+* Source code: /~https://github.com/cran/numbat
+* Date/Publication: 2023-06-17 18:50:02 UTC
+* Number of recursive dependencies: 135
 
-Run `cloud_details(, "Platypus")` for more info
+Run `cloud_details(, "numbat")` for more info
 
 </details>
 
@@ -83,22 +52,17 @@ Run `cloud_details(, "Platypus")` for more info
 ### Devel
 
 ```
-* using log directory ‘/tmp/workdir/Platypus/new/Platypus.Rcheck’
+* using log directory ‘/tmp/workdir/numbat/new/numbat.Rcheck’
 * using R version 4.1.1 (2021-08-10)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * using session charset: UTF-8
 * using option ‘--no-manual’
-* checking for file ‘Platypus/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘Platypus’ version ‘3.4.1’
+* checking for file ‘numbat/DESCRIPTION’ ... OK
+* this is package ‘numbat’ version ‘1.3.2-1’
 * package encoding: UTF-8
 * checking package namespace information ... OK
-...
 * checking package dependencies ... ERROR
-Package required but not available: ‘ggtree’
-
-Packages suggested but not available for checking:
-  'Matrix.utils', 'monocle3', 'ProjecTILs', 'SeuratWrappers'
+Packages required but not available: 'ggtree', 'scistreer'
 
 See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
 manual.
@@ -113,22 +77,17 @@ Status: 1 ERROR
 ### CRAN
 
 ```
-* using log directory ‘/tmp/workdir/Platypus/old/Platypus.Rcheck’
+* using log directory ‘/tmp/workdir/numbat/old/numbat.Rcheck’
 * using R version 4.1.1 (2021-08-10)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * using session charset: UTF-8
 * using option ‘--no-manual’
-* checking for file ‘Platypus/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘Platypus’ version ‘3.4.1’
+* checking for file ‘numbat/DESCRIPTION’ ... OK
+* this is package ‘numbat’ version ‘1.3.2-1’
 * package encoding: UTF-8
 * checking package namespace information ... OK
-...
 * checking package dependencies ... ERROR
-Package required but not available: ‘ggtree’
-
-Packages suggested but not available for checking:
-  'Matrix.utils', 'monocle3', 'ProjecTILs', 'SeuratWrappers'
+Packages required but not available: 'ggtree', 'scistreer'
 
 See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
 manual.