adegenet version 2.0.1
Adegenet version 2.0.1
This version contains a few new features, speedups, and bug fixes
NEW FEATURES
Hs()
is now much faster and will scale better for large number of lociHs.test()
allows for testing differences in expected heterozygosity between two
groups of individuals- strata tutorial is now available via
adegenetTutorial(which="strata")
- repool can now handle objects with no population information, and can return a
list of repooled genind (argument 'list' defauling to FALSE) read.fstat()
can now handle missing data coded by any number of "0"scatter.dapc()
function can now label individuals usingorditorp()
function
fromvegan
package, which takes care of overlapping (See issue #100)df2genind()
is now faster at handling missing data (See issue #114)- the summary method has better formatting
BUG FIXES
Hs()
no longer returnsNaN
if one locus has not been typed; instead,
computations are done using all available lociadegenetTutorial()
now opens up-to-date tutorials- subsetting genlight objects now treats missing data appropriately when given
logical, character, or negative subscripts. (See issue #83) - fixed occasional spurious warning about duplicated individual labels in
df2genind()
- fixed issues with mis-placed missing data in
df2genind()
when samples were
labeled with numbers (See issue #96) - frequencies can now be obtained from P/A genpop objects (See issue #105)
- Windows no longer throws an error with
as.genlight()
(See issue #109) read.genpop()
now returns individual names (See issue #117)