Apply template

.codecov.yaml

@@ -0,0 +1,11 @@
+comment: off
+coverage:
+  status:
+    project:
+      default:
+        threshold: 0.2%
+
+codecov:
+  require_ci_to_pass: false
+  notify:
+    wait_for_ci: true

.codespellrc

@@ -0,0 +1,13 @@
+[codespell]
+skip = *.asdf,*.fits,*.fts,*.header,*.json,*.xsh,*cache*,*egg*,*extern*,.git,.idea,.tox,_build,*truncated,*.svg,.asv_env,.history
+ignore-words-list =
+    alog,
+    nd,
+    nin,
+    observ,
+    ot,
+    te,
+    upto,
+    afile,
+    precessed,
+    precess

.coveragerc

@@ -0,0 +1,30 @@
+[run]
+omit =
+  sunkit_dem/conftest.py
+  sunkit_dem/*setup_package*
+  sunkit_dem/extern/*
+  sunkit_dem/version*
+  */sunkit_dem/conftest.py
+  */sunkit_dem/*setup_package*
+  */sunkit_dem/extern/*
+  */sunkit_dem/version*
+
+[report]
+exclude_lines =
+  # Have to re-enable the standard pragma
+  pragma: no cover
+  # Don't complain about packages we have installed
+  except ImportError
+  # Don't complain if tests don't hit assertions
+  raise AssertionError
+  raise NotImplementedError
+  # Don't complain about script hooks
+  def main(.*):
+  # Ignore branches that don't pertain to this version of Python
+  pragma: py{ignore_python_version}
+  # Don't complain about IPython completion helper
+  def _ipython_key_completions_
+  # typing.TYPE_CHECKING is False at runtime
+  if TYPE_CHECKING:
+  # Ignore typing overloads
+  @overload

.cruft.json

@@ -14,7 +14,7 @@
       "minimum_python_version": "3.10",
       "use_compiled_extensions": "n",
       "enable_dynamic_dev_versions": "y",
-      "include_example_code": "y",
+      "include_example_code": "n",
       "include_cruft_update_github_workflow": "y",
       "_sphinx_theme": "alabaster",
       "_parent_project": "",

.flake8

@@ -0,0 +1,27 @@
+[flake8]
+ignore =
+    # missing-whitespace-around-operator
+    E225
+    # missing-whitespace-around-arithmetic-operator
+    E226
+    # line-too-long
+    E501
+    # unused-import
+    F401
+    # undefined-local-with-import-star
+    F403
+    # redefined-while-unused
+    F811
+    # Line break occurred before a binary operator
+    W503,
+    # Line break occurred after a binary operator
+    W504
+max-line-length = 110
+exclude =
+    .git
+    __pycache__
+    docs/conf.py
+    build
+    sunkit-dem/__init__.py
+rst-directives =
+    plot

.github/workflows/ci.yml

@@ -0,0 +1,102 @@
+
+name: CI
+
+on:
+  push:
+    branches:
+      - 'main'
+      - '*.*'
+      - '!*backport*'
+    tags:
+      - 'v*'
+      - '!*dev*'
+      - '!*pre*'
+      - '!*post*'
+  pull_request:
+  # Allow manual runs through the web UI
+  workflow_dispatch:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  core:
+    uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@main
+    with:
+      submodules: false
+      coverage: codecov
+      toxdeps: tox-pypi-filter
+      envs: |
+        - linux: py312
+    secrets:
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+
+  sdist_verify:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.10'
+      - run: python -m pip install -U --user build
+      - run: python -m build . --sdist
+      - run: python -m pip install -U --user twine
+      - run: python -m twine check dist/*
+
+  test:
+    needs: [core, sdist_verify]
+    uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@main
+    with:
+      submodules: false
+      coverage: codecov
+      toxdeps: tox-pypi-filter
+      posargs: -n auto
+      envs: |
+        - windows: py311
+        - macos: py310
+        - linux: py310-oldestdeps
+    secrets:
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+
+  docs:
+    needs: [core]
+    uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@main
+    with:
+      default_python: '3.10'
+      submodules: false
+      pytest: false
+      toxdeps: tox-pypi-filter
+      libraries: |
+        apt:
+          - graphviz
+      envs: |
+        - linux: build_docs
+
+  cron:
+    if: |
+      github.event_name == 'workflow_dispatch' || (
+        github.event_name == 'pull_request' &&
+        contains(github.event.pull_request.labels.*.name, 'Run cron CI')
+      )
+    uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@main
+    with:
+      default_python: '3.10'
+      submodules: false
+      coverage: codecov
+      toxdeps: tox-pypi-filter
+      envs: |
+        - linux: py311-devdeps
+    secrets:
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+
+publish_pure:
+      needs: [test, docs]
+      uses: OpenAstronomy/github-actions-workflows/.github/workflows/publish_pure_python.yml@main
+      with:
+        python-version: '3.10'
+        test_extras: 'tests'
+        test_command: 'pytest -p no:warnings --doctest-rst --pyargs sunkit_dem'
+        submodules: false
+      secrets:
+        pypi_token: ${{ secrets.pypi_token }}

.github/workflows/sub_package_update.yml

@@ -0,0 +1,79 @@
+# This template is taken from the cruft example code, for further information please see:
+# https://cruft.github.io/cruft/#automating-updates-with-github-actions
+name: Automatic Update from package template
+permissions:
+    contents: write
+    pull-requests: write
+
+on:
+  # Allow manual runs through the web UI
+  workflow_dispatch:
+  schedule:
+    #        ┌───────── minute (0 - 59)
+    #        │ ┌───────── hour (0 - 23)
+    #        │ │ ┌───────── day of the month (1 - 31)
+    #        │ │ │ ┌───────── month (1 - 12 or JAN-DEC)
+    #        │ │ │ │ ┌───────── day of the week (0 - 6 or SUN-SAT)
+    - cron: '0 7 * * 1'  # Every Monday at 7am UTC
+
+jobs:
+  update:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: true
+      matrix:
+        include:
+          - add-paths: .
+            body: apply the changes to this repo.
+            branch: cruft/update
+            commit-message: "Automatic package template update"
+            title: Updates from the package template
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+
+      - name: Install Cruft
+        run: python -m pip install git+/~https://github.com/Cadair/cruft@patch-p1
+
+      - name: Check if update is available
+        continue-on-error: false
+        id: check
+        run: |
+          CHANGES=0
+          if [ -f .cruft.json ]; then
+            if ! cruft check; then
+              CHANGES=1
+            fi
+          else
+            echo "No .cruft.json file"
+          fi
+
+          echo "has_changes=$CHANGES" >> "$GITHUB_OUTPUT"
+
+      - name: Run update if available
+        if: steps.check.outputs.has_changes == '1'
+        run: |
+          git config --global user.email "${{ github.actor }}@users.noreply.github.com"
+          git config --global user.name "${{ github.actor }}"
+
+          cruft update --skip-apply-ask --refresh-private-variables
+          git restore --staged .
+
+      - name: Create pull request
+        if: steps.check.outputs.has_changes == '1'
+        uses: peter-evans/create-pull-request@v6
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          add-paths: ${{ matrix.add-paths }}
+          commit-message: ${{ matrix.commit-message }}
+          branch: ${{ matrix.branch }}
+          delete-branch: true
+          branch-suffix: timestamp
+          title: ${{ matrix.title }}
+          body: |
+            This is an autogenerated PR, which will ${{ matrix.body }}.
+            [Cruft](https://cruft.github.io/cruft/) has detected updates from the Package Template