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  1. SI50_calculation SI50_calculation Public

    R code with example to calculate the SI50 index. Used to determine cross population compatibility based on diallel cross design. This uses a four factor self starting model to determine the percent…

    R

  2. TriPhaseFunction TriPhaseFunction Public

    An R function for determining when a plant decreases leaf elongation rate in response soil water potential

    R

  3. GBSmode GBSmode Public

    GBSmode is a pipeline for genotype calling using GBS data.

    R

  4. DeplexGBS DeplexGBS Public

    A method for deplexing genotyping-by-sequencing data using the Euler computing system at ETH Zurich

    Shell

  5. filterVCF filterVCF Public

    A R script for filtering a vcf file

    R

  6. SAYEulerDataManagement SAYEulerDataManagement Public

    This guide will explain how to get your data onto the Euler computing system at ETH Zurich (http://scicomp.ethz.ch/wiki/Euler)

    Shell