v4.3.0
New features:
- add
sourmash sig grep
(#1864) - add
sourmash sig summarize
(#1837, #1863) - add
--include-db-pattern
and--exclude-db-pattern
to many commands (#1871) - update lca summarize output to output total counts (#1838)
Bug fixes:
- fix
sourmash prefetch
to work when db scaled is larger than query scaled (#1870) - fix
sourmash prefetch
for multiple ksizes in database (#1866) - allow missing columns in tax CSV files (#1869)
- fix containment calculation for nodegraphs (#1862)
- fix
tax prepare
SQL code for empty/blank taxonomic ranks (#1843)
Cleanup and documentation fixes:
- clean up 'describe' a little bit, add a test (#1861)
- add --output-dir as alias for every --outdir (#1817)
- fix doc titles in
command-line.md
and update description a bit (#1874)
Developer updates: