Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

cleanup taxonomy code after refactor #2446

Merged
merged 5 commits into from
Feb 7, 2023
Merged

cleanup taxonomy code after refactor #2446

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
b926337
clean up old/unused fns and associated tests
bluegenes Jan 13, 2023
16b3bec
fix comment
bluegenes Jan 13, 2023
12c36c6
add more doc comments
bluegenes Jan 13, 2023
bf9f48a
dont need empty () for dataclasses
bluegenes Jan 14, 2023
49aebdd
Merge branch 'use-new-tax-classes' into tax-cleanup
bluegenes Jan 16, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions src/sourmash/tax/__main__.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -11,10 +11,10 @@
import sourmash
from ..sourmash_args import FileOutputCSV, FileOutput
from sourmash.logging import set_quiet, error, notify, print_results
from sourmash.lca.lca_utils import display_lineage, zip_lineage
from sourmash.lca.lca_utils import zip_lineage

from . import tax_utils
from .tax_utils import ClassInf, MultiLineageDB, GatherRow
from .tax_utils import MultiLineageDB, GatherRow

usage='''
sourmash taxonomy <command> [<args>] - manipulate/work with taxonomy information.
Expand Down
Loading