Skip to content

Commit

Permalink
README: added docker section
Browse files Browse the repository at this point in the history
  • Loading branch information
Christian Roth authored Feb 9, 2018
1 parent 9b8290d commit 31f7d70
Showing 1 changed file with 10 additions and 0 deletions.
10 changes: 10 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -120,6 +120,16 @@ The `shoot_peng.py` python script can be used to annotate motifs according how w

Benchmarking requires [BaMMmotif2](/~https://github.com/soedinglab/BaMMmotif2).

## Docker image
PEnG-motif is included in our bamm-suite docker image `soedinglab/bamm-suite`.

After navigating into the directory with your fasta sequences use:

```
docker pull soedinglab/bamm-suite
docker run -v $UID:$GID -v $PWD/data soedinglab/bamm-suite peng_motif <fastafile.fa> <other options>
```

## License

Expand Down

0 comments on commit 31f7d70

Please sign in to comment.