Repositories list

• vigeas

  Public
  VIral GEnome ASsembly pipelines for WGS

  nanoporeilluminawhole-genome-sequencing+ 1viral-genomics

  R

  •0•3•0•0•Updated Feb 23, 2025Feb 23, 2025

• Origin-and-Dispersal-of-Subtype-F1-HIV-1-in-Bahia-Northeast-Brazil

  Public
  0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• Early-ZIKV-genomes-NE-BR-to-the-Americas

  Public
  Analyses of Early ZIKV Genomes Are Consistent with Viral Spread from Northeast Brazil to the Americas

  0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• labstuffs

  Public
  This repository contains scripts and files to run the bioinformatic analysis of khourious reaseach lab

  wsl2macoslinux

  HTML

  •1•4•0•0•Updated Oct 19, 2024Oct 19, 2024

• sara

  Public
  semi automatic RNA-Seq analysis

  Shell

  •0•2•0•0•Updated Jul 4, 2024Jul 4, 2024

• rnapenr

  Public archive
  Shell

  •0•0•0•0•Updated Dec 6, 2023Dec 6, 2023

• IGM-TRAIN

  Public
  Bioinformática Decodificada: A Jornada do Iniciante à Genômica de Patógenos

  Jupyter Notebook

  •

  Creative Commons Zero v1.0 Universal

  •0•6•0•0•Updated Dec 1, 2023Dec 1, 2023

• SARS-COV-2_B4B

  Public
  This is a repository for development of the SARS-CoV-2 Bioinformatics for Beginners Course

  Jupyter Notebook

  •15•2•0•0•Updated Jun 22, 2023Jun 22, 2023

• IGM_SARSCOV2

  Public archive
  dezordi/ViralFlow workflow for SARS-CoV-2 reference guided genome assembly modified by FIOCRUZ-IGM to work locally

  Python

  •13•0•0•0•Updated Oct 22, 2022Oct 22, 2022

• vgapONT

  Public archive
  Viral genome assembly pipeline for WGS using ONT

  bioinformaticspipelinegenomics+ 7minionwhole-genome-sequencingviral-genomicszikachikungunyananopore-sequencingsars-cov-2

  Shell

  •0•2•0•0•Updated Oct 22, 2022Oct 22, 2022

• minion-seq

  Public archive
  Python

  •3•0•0•0•Updated Oct 22, 2022Oct 22, 2022