Skip to content

@TGenNorth Translational Genomics Research Institute - Division of Pathogen Genomics

Change the repository type filter

All

    Repositories list

    19 repositories

    • arizona-covid-19

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 26, 2024Dec 26, 2024

    • q2-asap

      Public
      ASAP qiime2 wrapper
      Python
      •
      Other
      •1•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • ASAP

      Public
      Amplicon Sequencing Analysis Pipeline
      XSLT
      •
      Other
      •4•15•0•0•Updated Dec 10, 2024Dec 10, 2024

    • NASP

      Public
      Northern Arizona SNP Pipeline
      Python
      •
      Other
      •9•19•6•0•Updated Oct 29, 2024Oct 29, 2024

    • ASAPTools

      Public
      R
      •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • tgen.north.lab.sequencing.tools

      Public
      R package that contains scripts for laboratory sequencing preps.
      R
      •0•0•2•0•Updated Oct 10, 2024Oct 10, 2024

    • q2-tnorth-bot

      Public
      A plugin to facilitate automated initial processing of TGen North sequencing data.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 11, 2024Sep 11, 2024

    • errorutils

      Public
      Reusable optional functions error framework
      Go
      •
      Other
      •1•0•0•0•Updated Jul 6, 2023Jul 6, 2023

    • vipr

      Public
      Virtual PCR
      Go
      •
      Other
      •0•8•0•0•Updated Mar 27, 2023Mar 27, 2023

    • igas-emm49-nextstrain

      Public
      0•0•0•0•Updated Feb 13, 2023Feb 13, 2023

    • TM2_PepSeq

      Public
      TM2 PepSeq library design
      HTML
      •0•0•0•0•Updated Mar 2, 2022Mar 2, 2022

    • TCR_framework

      Public
      R
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Aug 6, 2021Aug 6, 2021

    • nextstrain-misc

      Public
      Placeholder for various potential NextStrain community builds
      Python
      •0•0•0•0•Updated Apr 13, 2021Apr 13, 2021

    • BT-Seq-ASAP

      Public
      Amplicon Sequencing Analysis Pipeline for detecting BioThreat agents
      XSLT
      •
      Other
      •0•0•0•0•Updated Jun 15, 2020Jun 15, 2020

    • .github

      Public
      https://help.github.com/en/articles/creating-a-default-community-health-file-for-your-organization
      0•0•0•0•Updated Aug 23, 2019Aug 23, 2019

    • RECAP

      Public
      RECombination Analysis Tool
      JavaScript
      •0•0•0•0•Updated Mar 11, 2019Mar 11, 2019

    • SMOR

      Public
      Single Molecule-Overlapping Read analysis script
      Perl
      •2•2•0•0•Updated Sep 22, 2016Sep 22, 2016

    • TB-ASAP

      Public
      TB-specific Amplicon Sequencing Analysis Pipeline
      Python
      •
      Other
      •2•5•0•0•Updated Sep 16, 2016Sep 16, 2016

    • ISGPipeline

      Public
      In Silico Genotyper pipeline
      Java
      •
      GNU General Public License v3.0
      •0•3•1•0•Updated Nov 19, 2015Nov 19, 2015