Repositories list

• seqdb-api

  Public
  Services for managing laboratory workflows and DNA sequence tracking / Services permettant la gestion de donnée de laboratoire et le suivi de séquences d’ADN.

  Java

  •

  MIT License

  •3•2•0•2•Updated Jan 21, 2025Jan 21, 2025

• dina-local-deployment

  Public
  Deployment scripts and files for local deployment of the DINA system

  CSS

  •

  MIT License

  •2•5•0•3•Updated Jan 21, 2025Jan 21, 2025

• dina-ui

  Public
  React based user interface for the DINA project / Interface utilisateur basée sur React pour le projet DINA

  TypeScript

  •

  MIT License

  •6•4•7•8•Updated Jan 21, 2025Jan 21, 2025

• object-store-api

  Public
  AAFC DINA object-store implementation

  biodiversity-data

  Java

  •

  MIT License

  •4•0•1•0•Updated Jan 20, 2025Jan 20, 2025

• dina-search-api

  Public
  Search module for AAFC-DINA

  Java

  •

  MIT License

  •1•1•2•1•Updated Jan 20, 2025Jan 20, 2025

• dina-base-api

  Public
  Base DINA API package for Java built on SpringBoot

  Java

  •

  MIT License

  •2•2•0•3•Updated Jan 17, 2025Jan 17, 2025

• agent-api

  Public
  AAFC DINA agent module implementation / Implémentation du module de Agent DINA de AAC

  biodiversity-data

  Java

  •

  MIT License

  •2•0•2•0•Updated Jan 16, 2025Jan 16, 2025

• natural-history-collection-api

  Public
  AAFC DINA Collection module implementation / Implémentation du module de Collection DINA de AAC

  biodiversity-data

  Java

  •

  MIT License

  •3•5•3•2•Updated Jan 9, 2025Jan 9, 2025

• dina-py

  Public
  Python access to the DINA API

  Python

  •

  MIT License

  •0•1•2•0•Updated Dec 23, 2024Dec 23, 2024

• dina-export-api

  Public
  Data Export, Report and Label module

  Java

  •

  MIT License

  •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

• dina-db-init-container

  Public
  init-container used to manage DINA databases for dev/test env

  Shell

  •

  MIT License

  •0•1•0•0•Updated Dec 16, 2024Dec 16, 2024

• dina-user-api

  Public
  AAFC DINA User Module

  Java

  •

  MIT License

  •0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

• dina-documentation

  Public
  AAFC-DINA Documentation

  MIT License

  •1•0•0•3•Updated Nov 12, 2024Nov 12, 2024

• dina-feedback

  Public
  DINA Feedback / Rétroaction DINA

  0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

• loan-transaction-api

  Public
  AAFC DINA loan-transaction implementation

  Java

  •

  MIT License

  •1•0•0•0•Updated Aug 20, 2024Aug 20, 2024

• object-store-harvestor

  Public archive
  Go

  •

  MIT License

  •1•0•3•0•Updated Jul 11, 2024Jul 11, 2024

• reports-labels

  Public
  A webservice for reports and labels based on HTML templates.

  JavaScript

  •

  MIT License

  •3•1•0•0•Updated Apr 1, 2024Apr 1, 2024

• auchenorrhyncha-ortholog-baitset

  Public
  A repository supporting the methodology and distribution of a custom baitset used for insect target enrichment sequencing

  MIT License

  •0•1•0•0•Updated Dec 14, 2023Dec 14, 2023

• snakemake-partial-genome-pipeline

  Public
  Snakemake Pipeline for processing BioMob WP2 partial genome sequencing data

  Python

  •

  MIT License

  •1•3•0•1•Updated Dec 4, 2023Dec 4, 2023

• elateridae-ortholog-baitset

  Public
  Code used to generate Elateridae baits for use in BioMob WP2 experiments, along with the bait set itself

  Python

  •

  MIT License

  •0•1•0•0•Updated Dec 4, 2023Dec 4, 2023

• staphylinidae-ortholog-baitset

  Public
  Code used to generate Staphylinidae baits for use in BioMob WP2 experiments, along with the bait set itself

  Python

  •

  MIT License

  •1•1•0•1•Updated Dec 4, 2023Dec 4, 2023

• hpdb

  Public
  Agriculture and Agri-Food Canada’s (AAFC) internally developed Host Pathogen Database Web Application (hpdb) has been created to give access to the AAFC curated Canadian Host-Pathogen Database. The application currently allows the searching of Host Records, Pathogen Records and Host-Pathogen Records.

  Java

  •

  MIT License

  •1•0•0•0•Updated May 8, 2023May 8, 2023

• reference-data-manager

  Public
  Manages reference data for bioinformatics analysis.

  Python

  •

  MIT License

  •2•1•0•4•Updated Feb 8, 2023Feb 8, 2023

• nrc-ngs-downloader

  Public
  nrc-ngs-downloader is a software written in Python. This software explores the NRC-LIMS website, downloads all the sequence files, and keeps the meta data of all the sequences in a sqlite database.

  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 4, 2022Nov 4, 2022

• xlsx2redmine

  Public
  Import a task list in XLSX format into redmine

  Python

  •

  MIT License

  •0•1•0•1•Updated Jul 1, 2022Jul 1, 2022

• dina-planning

  Public
  AAFC-DINA planning repository

  2•3•137•0•Updated Jan 27, 2022Jan 27, 2022

• ITISProxyLoader

  Public archive
  Load ITIS proxy from ITIS SQLite3 database export

  Java

  •

  MIT License

  •0•0•0•0•Updated Dec 14, 2021Dec 14, 2021

• ITISProxy

  Public archive
  Java

  •

  MIT License

  •0•0•0•0•Updated Dec 14, 2021Dec 14, 2021

• biomob-portal-planning

  Public
  Repository where users and developers can create and discuss issues during development

  0•1•15•0•Updated Nov 22, 2021Nov 22, 2021

• crnk-framework

  Public
  JSON API library for Java

  Java

  •

  Apache License 2.0

  •157•0•0•0•Updated Aug 12, 2021Aug 12, 2021