fix the choice of the canonical portal, to be using the list of the r… #2528
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| # This workflow uses actions that are not certified by GitHub. | |
| # They are provided by a third-party and are governed by | |
| # separate terms of service, privacy policy, and support | |
| # documentation. | |
| # This workflow will download a prebuilt Ruby version, install dependencies and run tests with Rake | |
| # For more information see: /~https://github.com/marketplace/actions/setup-ruby-jruby-and-truffleruby | |
| name: "Run local API tests CI" | |
| on: | |
| push: | |
| pull_request: | |
| types: [ opened, reopened ] | |
| env: | |
| API_URL: http://localhost:9393 | |
| REMOTE_API_KEY: 8b5b7825-538d-40e0-9e9e-5ab9274a9aeb | |
| REMOTE_API_URL: https://data.bioontology.org | |
| BIOMIXER_URL: ${{ secrets.BIOMIXER_URL }} | |
| FAIRNESS_URL: ${{ secrets.FAIRNESS_URL }} | |
| ANNOTATOR_URL: ${{ secrets.ANNOTATOR_URL }} | |
| DB_HOST: 127.0.0.1 | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| services: | |
| mysql: | |
| image: mysql:8.0 | |
| ports: | |
| - "3306:3306" | |
| env: | |
| MYSQL_ROOT_PASSWORD: root | |
| memcached: | |
| image: memcached:1.6 | |
| ports: | |
| - 11211:11211 | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| # Add or replace dependency steps here | |
| - name: Install Ruby and gems | |
| uses: ruby/setup-ruby@v1 | |
| with: | |
| ruby-version: 2.7.8 | |
| bundler-cache: true | |
| - name: Run OntoPortal API | |
| run: bin/run_api -k ${{ env.REMOTE_API_KEY }} -r agroportal -t master -s STY -u ${{ env.REMOTE_API_URL }} | |
| # Add or replace database setup steps here | |
| - name: set up config file | |
| run: cp config/database.yml.sample config/database.yml | |
| - name: Set up database schema | |
| run: RAILS_ENV=test bin/rails db:setup | |
| - name: Set up yarn | |
| run: yarn install | |
| # Add or replace test runners here | |
| - name: Run tests | |
| run: COVERAGE=true RAILS_ENV=test bin/rails test -v | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |