avoid call to getNodeNames in mcmc_determineCalcAndCopyNodes (#1333) #690
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| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| - devel | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| - devel | |
| name: CI | |
| jobs: | |
| CI: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release', batch: 1} | |
| - {os: macOS-latest, r: 'release', batch: 1} # was hard-coded to 4.2.2 due to issues a while back | |
| - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest", batch: 1} | |
| - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest", batch: 1} | |
| - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest", batch: 2} | |
| - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest", batch: 3} | |
| - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest", batch: 4} | |
| - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest", batch: 5} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| NIMBLE_TEST_BATCH: ${{ matrix.config.batch }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(pkgdir = './packages/nimble', dependencies = TRUE), | |
| ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Restore R package cache | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04", "./packages/nimble"))') | |
| sudo apt-get install libcurl4-openssl-dev # needed for R pkg curl -> covr | |
| - name: Install dependencies | |
| run: | | |
| source('install_requirements.R') # Windows doesn't like running via ./install_requirements.R | |
| shell: Rscript {0} | |
| - name: Install nimble (Windows) | |
| if: runner.os == 'Windows' | |
| run: | | |
| RCMD INSTALL --install-tests packages\\nimble | |
| - name: Install nimble | |
| if: runner.os != 'Windows' | |
| run: | | |
| R CMD build packages/nimble # Is this needed? Is purpose of this to see if 'build' induces an error? | |
| R CMD INSTALL --install-tests --enable-dylib=false packages/nimble # use libnimble.a to reduce seg faults when using clearCompiled for long sets of AD tests | |
| - name: Install reverse dependencies | |
| run: | | |
| source('install_revDeps.R') # Windows doesn't like running via ./install_requirements.R | |
| shell: Rscript {0} | |
| - name: Run tests | |
| run: | | |
| source('run_tests.R') # Windows doesn't like running via ./run_tests.R | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |