Specify pScreenAdjusted argument depending on analysis method

nf-core · Jan 8, 2024 · 8043897 · 8043897
1 parent d77b483
commit 8043897
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bin/run_stager.R b/bin/run_stager.R
@@ -148,7 +148,7 @@ object <- stageRTx(
     pScreen         = output[["pScreen"]],
     pConfirmation   = output[["pConfirmation"]],
     tx2gene         = output[["tx2gene"]],
-    pScreenAdjusted = FALSE
+    pScreenAdjusted = switch(analysis, "dexseq" = TRUE, "drimseq" = FALSE)
 )