replace deprecations with new funcs #105
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@ake123 could you finalize this one so we can close? |
| @@ -50,7 +50,7 @@ test_that("plot graph", { | |||
| expect_equal(miaViz:::.colnames_tbl_graph(actual,"edges"), | |||
| c("from","to","weight")) | |||
| # | |||
| genus <- agglomerateByRank(GlobalPatterns,"Genus",na.rm=TRUE) | |||
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This is incorrect. mergeFeaturesByRank will be removed
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This PR replaces agglomerateByRank with mergeFeaturesByRank, however, the mergeFeaturesByRank will be deprectated. (I have not updated Bioc devel of mia since we have still some modifications in GH that are under discussion) Also, the cluster function will be deprecated so this PR has only old information. Sorry for that |
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