Fix sliced ConcatenationTable pickling with mixed schemas vertically (#…

…6715)

* fix ConcatenationTable pickling with mixed schemas vertically

* fix slicing

* fix tests

src/datasets/table.py

@@ -1311,11 +1311,20 @@ def __init__(self, table: pa.Table, blocks: List[List[TableBlock]]):
                     )
 
     def __getstate__(self):
-        return {"blocks": self.blocks}
+        return {"blocks": self.blocks, "schema": self.table.schema}
 
     def __setstate__(self, state):
         blocks = state["blocks"]
+        schema = state["schema"]
         table = self._concat_blocks_horizontally_and_vertically(blocks)
+        if schema is not None and table.schema != schema:
+            # We fix the columns by concatenating with an empty table with the right columns
+            empty_table = pa.Table.from_batches([], schema=schema)
+            # we set promote=True to fill missing columns with null values
+            if config.PYARROW_VERSION.major < 14:
+                table = pa.concat_tables([table, empty_table], promote=True)
+            else:
+                table = pa.concat_tables([table, empty_table], promote_options="default")
         ConcatenationTable.__init__(self, table, blocks=blocks)
 
     @staticmethod

tests/test_arrow_dataset.py

@@ -73,6 +73,10 @@ def __reduce__(self):
 
 
 class Unpicklable:
+    def __init__(self, **kwargs):
+        for key, value in kwargs.items():
+            setattr(self, key, value)
+
     def __getstate__(self):
         raise pickle.PicklingError()
 
@@ -811,6 +815,7 @@ def test_concatenate_pickle(self, in_memory):
                 Dataset.from_dict(data2, info=info2),
                 Dataset.from_dict(data3),
             )
+            schema = dset1.data.schema
             # mix from in-memory and on-disk datasets
             dset1, dset2 = self._to(in_memory, tmp_dir, dset1, dset2)
             dset3 = self._to(not in_memory, tmp_dir, dset3)
@@ -835,13 +840,13 @@ def test_concatenate_pickle(self, in_memory):
             dset3 = dset3.rename_column("foo", "new_foo")
             dset3 = dset3.remove_columns("new_foo")
             if in_memory:
-                dset3._data.table = Unpicklable()
+                dset3._data.table = Unpicklable(schema=schema)
             else:
-                dset1._data.table, dset2._data.table = Unpicklable(), Unpicklable()
+                dset1._data.table, dset2._data.table = Unpicklable(schema=schema), Unpicklable(schema=schema)
             dset1, dset2, dset3 = (pickle.loads(pickle.dumps(d)) for d in (dset1, dset2, dset3))
             with concatenate_datasets([dset3, dset2, dset1]) as dset_concat:
                 if not in_memory:
-                    dset_concat._data.table = Unpicklable()
+                    dset_concat._data.table = Unpicklable(schema=schema)
                 with pickle.loads(pickle.dumps(dset_concat)) as dset_concat:
                     self.assertTupleEqual((len(dset1), len(dset2), len(dset3)), (3, 3, 2))
                     self.assertEqual(len(dset_concat), len(dset1) + len(dset2) + len(dset3))

tests/test_table.py

@@ -787,6 +787,27 @@ def test_concatenation_table_slice(
     assert isinstance(table, ConcatenationTable)
 
 
+def test_concatenation_table_slice_mixed_schemas_vertically(arrow_file):
+    t1 = MemoryMappedTable.from_file(arrow_file)
+    t2 = InMemoryTable.from_pydict({"additional_column": ["foo"]})
+    expected = pa.table(
+        {
+            **{column: values + [None] for column, values in t1.to_pydict().items()},
+            "additional_column": [None] * len(t1) + ["foo"],
+        }
+    )
+    blocks = [[t1], [t2]]
+    table = ConcatenationTable.from_blocks(blocks)
+    assert table.to_pydict() == expected.to_pydict()
+    assert isinstance(table, ConcatenationTable)
+    reloaded = pickle.loads(pickle.dumps(table))
+    assert reloaded.to_pydict() == expected.to_pydict()
+    assert isinstance(reloaded, ConcatenationTable)
+    reloaded = pickle.loads(pickle.dumps(table.slice(1, 2)))
+    assert reloaded.to_pydict() == expected.slice(1, 2).to_pydict()
+    assert isinstance(reloaded, ConcatenationTable)
+
+
 @pytest.mark.parametrize("blocks_type", ["in_memory", "memory_mapped", "mixed"])
 def test_concatenation_table_filter(
     blocks_type, in_memory_pa_table, in_memory_blocks, memory_mapped_blocks, mixed_in_memory_and_memory_mapped_blocks