MAINT: code tidy

[GavinHuttley]

Summary by Sourcery

This PR performs minor code tidying, including removing unused code and standardising type annotations.

[sourcery-ai]

Reviewer's Guide by Sourcery

This pull request focuses on code tidying. It removes commented-out code, updates type hints for better clarity, and refactors an assertion in a test for improved readability.

Updated class diagram for TranscriptSpan

classDiagram
  class TranscriptSpan {
    transcript_spans: np.ndarray
    cds_spans: np.ndarray
    exon_spans: np.ndarray
    start() int
    stop() int
    to_record(columns: tuple[str, ...]) tuple
  }

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File-Level Changes

Change	Details	Files
Removed commented-out code and unused attributes in location_attrs.	Removed commented-out coord_names attribute. Removed commented-out meta attribute.	src/ensembl_tui/_mysql_core_attr.py
Updated the type hint for the columns parameter in the to_record method of the Transcript class to be a tuple of strings.	Changed columns: tuple[str] to columns: tuple[str, ...].	src/ensembl_tui/_mysql_core_attr.py
Refactored the assertion in test_check_one_cds_seq to directly compare the sequence instead of converting the slice to a string.	Replaced assert str(cds.get_slice()) == expect with assert str(seq) == expect.	tests/test_cli.py

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[sourcery-ai]

Hey @GavinHuttley - I've reviewed your changes - here's some feedback:

Overall Comments:

• The change to to_record's columns argument should include a type annotation change in the function signature.

Here's what I looked at during the review

• 🟢 General issues: all looks good
• 🟢 Security: all looks good
• 🟢 Testing: all looks good
• 🟢 Complexity: all looks good
• 🟢 Documentation: all looks good

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[coveralls]

Pull Request Test Coverage Report for Build 13558106124

Details

• 1 of 1 (100.0%) changed or added relevant line in 1 file are covered.
• No unchanged relevant lines lost coverage.
• Overall coverage remained the same at 87.673%

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Totals
Change from base Build 13556903411:	0.0%
Covered Lines:	2660
Relevant Lines:	3034

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💛 - Coveralls