ENH: allow specifying the directory for creating tmpdir

[GavinHuttley]

Summary by Sourcery

Enhancements:

• Add a working_dir parameter to the tempdir context manager to create the temporary directory in the specified location.

[sourcery-ai]

Reviewer's Guide by Sourcery

This pull request introduces a change to the tempdir context manager to allow specifying the directory where the temporary directory is created. It also modifies the tempdb function to use the current working directory as the base directory for the temporary directory.

Sequence diagram for temporary directory creation with custom working directory

sequenceDiagram
    participant C as Client Code
    participant T as tempdir()
    participant S as System temp

    C->>+T: Create temp dir(working_dir)
    alt working_dir specified
        T->>S: Create temp dir in working_dir
    else working_dir not specified
        T->>S: Create temp dir in system default
    end
    T-->>-C: Return Path object
    Note over C,T: Use temp dir
    C->>T: Exit context
    T->>S: Clean up temp dir

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Class diagram showing tempdir function modification

classDiagram
    class tempdir{
        +__enter__(working_dir: Optional[Path|str]) Path
        +__exit__()
    }
    note for tempdir "Modified to accept working_dir parameter"

    class Path{
        +cwd() Path
    }

    tempdir ..> Path: uses

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File-Level Changes

Change	Details	Files
Modified the tempdir context manager to accept an optional working_dir argument.	Added an optional working_dir parameter to the tempdir context manager. Modified the tempfile.TemporaryDirectory call to use the provided working_dir if available. Added a CWD constant to store the current working directory.	src/ensembl_tui/_util.py
Modified the tempdb function to use the current working directory as the base directory for the temporary directory.	Modified the tempdir call in tempdb to pass the CWD constant as the working_dir argument.	src/ensembl_tui/_ingest_annotation.py

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[sourcery-ai]

Hey @GavinHuttley - I've reviewed your changes - here's some feedback:

Overall Comments:

• Consider making the temp directory location configurable rather than hardcoding CWD in _ingest_annotation.py

Here's what I looked at during the review

• 🟢 General issues: all looks good
• 🟢 Security: all looks good
• 🟢 Testing: all looks good
• 🟢 Complexity: all looks good
• 🟢 Documentation: all looks good

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[coveralls]

Pull Request Test Coverage Report for Build 12859953874

Details

• 4 of 4 (100.0%) changed or added relevant lines in 2 files are covered.
• No unchanged relevant lines lost coverage.
• Overall first build on develop at 86.952%

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Totals
Change from base Build 12821829351:	87.0%
Covered Lines:	2639
Relevant Lines:	3035

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💛 - Coveralls