This repo contains experimental AUTOMATED mappings between OBI and other ontologies and ontology-like resources
For context see:
In future, this may potentially be included in mapping commons
See downloads
- obi
- bao
- mesh
- wikidata TODO
All mappings are in SSSOM, TSV rendering
Currently we use owl:equivalentClass as predicate in the mappings, but this could be skos:exactMatch. The goal is to provide precise 1:1 mappings.
IMPORTANT NOTE: we perform a dedupe step usings sssom-py, but otherwise we leave in all lexical matches, even low confidence ones. These are useful for getting a sense of general conceptual overlap between two resources. In future we will use boomer to reduce these. For now, pay attention to the confidence score column and match_category. In general confidence <0.5 is likely to be a false positive.
See mappings
We use rdfmatch
Rules are in conf/
See Makefile
TODO: instructions on how to run with Docker
Mappings are extremely useful for the users of ontologies. It allows users to map annotations from one system to another.
Mappings are also very useful for a gap analysis of ontologies. TODO: add unmapped
User boomer to refine mappings