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<span class="md-ellipsis">
Home

</span>


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<span class="md-ellipsis">
Getting Started

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<span class="md-ellipsis">
Accessing BlueBEAR and the BEAR Portal

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<span class="md-ellipsis">
Workshop 1 - Introduction to BlueBEAR and Linux

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<span class="md-ellipsis">
Workshop 1 - Aims and objectives

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<span class="md-ellipsis">
Introduction to the BlueBEAR Portal

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<span class="md-ellipsis">
Introduction to Linux

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<span class="md-ellipsis">
Workshop 2 - Basic MRI skills

</span>


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<span class="md-ellipsis">
Workshop 2 - Aims and objectives

</span>


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<span class="md-ellipsis">
Working with MRI Data - Files and Formats

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<span class="md-ellipsis">
MRI data visualization with FSLeyes

</span>


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<span class="md-ellipsis">
Workshop 3 - Basic diffusion MRI analysis

</span>


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<span class="md-ellipsis">
Workshop 3 - Aims and objectives

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<span class="md-ellipsis">
Diffusion MRI basics - visualization and preprocessing

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<span class="md-ellipsis">
Diffusion tensor fitting and Tract-Based Spatial Statistics

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<span class="md-ellipsis">
Workshop 4 - Advanced diffusion MRI analysis

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<span class="md-ellipsis">
Workshop 4 - Aims and objectives

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<span class="md-ellipsis">
Probabilistic tractography

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<span class="md-ellipsis">
Workshop 5 - First-level fMRI analysis

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<span class="md-ellipsis">
Workshop 5 - Aims and objectives

</span>


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<span class="md-ellipsis">
Troubleshooting brain extraction with BET

</span>


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<span class="md-ellipsis">
Running the first-level analysis

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<span class="md-ellipsis">
Workshop 6 - Scripts, containers and running jobs on the cluster

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<span class="md-ellipsis">
Workshop 6 - Aims and objectives

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<span class="md-ellipsis">
Scripting analyses, running jobs on the cluster and working with containers

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<span class="md-ellipsis">
Workshop 7 - Higher-level fMRI analysis

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<span class="md-ellipsis">
Workshop 7 - Aims and objectives

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<span class="md-ellipsis">
Running the higher-level analysis

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<span class="md-ellipsis">
Advanced fMRI analysis tools

</span>


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<span class="md-ellipsis">
Workshop 8 - Functional connectivity

</span>


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<span class="md-ellipsis">
Functional connectivity analysis of resting-state fMRI data using FSL

</span>


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<span class="md-ellipsis">
Additional Resources

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<span class="md-ellipsis">
Contributors

</span>


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